Question: SRA submitted files
0
gravatar for arunprasanna83
2.9 years ago by
arunprasanna8340 wrote:

Hello,

Can anyone please help me with following doubt ?. Are the fastq files submitted in SRA are trimmed with adapters and QC checked ? or they are raw reads straight from the sequencing ? What is the usual custom followed ?

Thanks,

AP

rna-seq ngs • 966 views
ADD COMMENTlink modified 5 weeks ago by Biostar ♦♦ 20 • written 2.9 years ago by arunprasanna8340

AFAIR, I have seen untrimmed reads on SRA without any QC.

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by Santosh Anand5.0k
1
gravatar for h.mon
2.9 years ago by
h.mon29k
Brazil
h.mon29k wrote:

You will find everything there, from raw reads to quality- and adapter-trimmed reads.

You will find from properly described experiments to experiments where it is impossible to ascertain samples to treatments.

You will find from complete datasets to mangled datasets, e.g. only forward reads from a paired end dataset.

ADD COMMENTlink written 2.9 years ago by h.mon29k
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