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• How to define and/or identify Partially methylated domain (DNA methylation)
  How to identify or define Partially methylated domains given processed DNA methylation data with ...
• How to measure the methylation level of a gene?
  If I known the methylation information of every site of genome, how to measure the methylation le...
• Functional analysis of differential methylation regions
  In Functional analysis of differential methylation regions. how to compute absolute log-fold ?
• What is the meaning of methylation level of C in DNA Sequenced data?
  Hi bioinfo guys, I am new in the field of DNA methylation. I read one paper where they have desc...
• Threshold for Differentially Methylated Regions
  Hi, Which threshold is appropriate for determining meaningful differentially methylated regions...
• tools for alignment and methylation extraction for MeDIP sequencing
  For methylation study in cancer, we have MeDIP-seq data. What are all tools that we can use for a...
• methylation array group probes
  Is there a good way to group probes from a methylation array (to get regions instead of single po...
• Definition and formula of methylation heterogeneity
  Dear All, Now everybody are talking about methylation heterogeneity? I just wonder what's methyl...
• TCGA Methylation data is gone
  I was working with methylation data stored in TCGA couple months ago, but now the site changed an...
• minfi package, methylation data
  Hi, I am using minfi package for methylation data analysis. There are many packages used for met...
• map TCGA methylation to CpG sites
  I was wondering if anyone knows how to map TCGA methylation to CpG sites? Thank you !
• Are There Any Alternatives To Methylkit For Methylation Call ?
  I have RRBS data. I tried to find differentially methylated promoter region using methylKit, but ...
• Low methylation regions or non-methylation regions from WGBS dataset
  Hi All, Any method or software to recommend to identify low methylation regions or non-methylati...