I'm using eCLIP .bigbed files downloaded from the ENCODE project. I'm try to get a gene list - which genes have tags.
I've been trying to use the "Operate on genomic intervals - Join" function in Galaxy. This I've used before for .bed files. But it doesn't seem to work on .bigbed files.
Converting them to .bed files appears to be non-trivial as well.
Any help getting this to work, or an alternative method for getting a gene list for these data would be most appreciated!!!
Thanks in advance.