Question: (Closed) Variant calling following multiple sequence alignment
0
gravatar for vivien.wee16
5 months ago by
vivien.wee160 wrote:

Hi everyone,

Are there any tools/pipelines available that I can use to call for variants/SNPs following multiple sequence alignment? I need something that can call for variants between the sequences, and not from a reference genome.

Thank you in advance!

snp alignment • 267 views
ADD COMMENTlink written 5 months ago by vivien.wee160
4
gravatar for Pierre Lindenbaum
5 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum98k wrote:

see:

ADD COMMENTlink written 5 months ago by Pierre Lindenbaum98k

Thank you, snp-sites works for my analyses!

ADD REPLYlink written 5 months ago by vivien.wee160

great, clicks the green mark on left to accept and close the question please.

ADD REPLYlink written 5 months ago by Pierre Lindenbaum98k
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