Question: (Closed) Variant calling following multiple sequence alignment
0
gravatar for vivien.wee16
5 weeks ago by
vivien.wee160 wrote:

Hi everyone,

Are there any tools/pipelines available that I can use to call for variants/SNPs following multiple sequence alignment? I need something that can call for variants between the sequences, and not from a reference genome.

Thank you in advance!

snp alignment • 120 views
ADD COMMENTlink written 5 weeks ago by vivien.wee160

Hello vivien.wee16!

We believe that this post does not fit the main topic of this site.

solved

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 11 days ago by vivien.wee160
2
gravatar for Pierre Lindenbaum
5 weeks ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum94k wrote:

see:

ADD COMMENTlink written 5 weeks ago by Pierre Lindenbaum94k

Thank you, snp-sites works for my analyses!

ADD REPLYlink written 4 weeks ago by vivien.wee160

great, clicks the green mark on left to accept and close the question please.

ADD REPLYlink written 4 weeks ago by Pierre Lindenbaum94k
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