Question: Variant calling following multiple sequence alignment
0
gravatar for vivien.wee16
3 days ago by
vivien.wee160 wrote:

Hi everyone,

Are there any tools/pipelines available that I can use to call for variants/SNPs following multiple sequence alignment? I need something that can call for variants between the sequences, and not from a reference genome.

Thank you in advance!

snp alignment • 87 views
ADD COMMENTlink written 3 days ago by vivien.wee160
2
gravatar for Pierre Lindenbaum
3 days ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum92k wrote:

see:

ADD COMMENTlink written 3 days ago by Pierre Lindenbaum92k

Thank you, snp-sites works for my analyses!

ADD REPLYlink written 1 day ago by vivien.wee160

great, clicks the green mark on left to accept and close the question please.

ADD REPLYlink written 1 day ago by Pierre Lindenbaum92k
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