Question: (Closed) Variant calling following multiple sequence alignment
0
gravatar for vivien.wee16
2.7 years ago by
vivien.wee160 wrote:

Hi everyone,

Are there any tools/pipelines available that I can use to call for variants/SNPs following multiple sequence alignment? I need something that can call for variants between the sequences, and not from a reference genome.

Thank you in advance!

snp alignment • 2.2k views
ADD COMMENTlink written 2.7 years ago by vivien.wee160
4
gravatar for Pierre Lindenbaum
2.7 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum125k wrote:

see:

ADD COMMENTlink written 2.7 years ago by Pierre Lindenbaum125k

Thank you, snp-sites works for my analyses!

ADD REPLYlink written 2.7 years ago by vivien.wee160

great, clicks the green mark on left to accept and close the question please.

ADD REPLYlink written 2.7 years ago by Pierre Lindenbaum125k
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