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Question: SRA Toolkit fastq-dump error
1
gravatar for pratibha_jagannatha
2.3 years ago by
pratibha_jagannatha • 10
pratibha_jagannatha • 10 wrote:

I'm getting this error when using fastq-dump in the SRA toolkit and am not sure what it means or how to fix it...

fastq-dump.2.8.2 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )
rna-seq • 2.7k views
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modified 5 weeks ago by nc52 • 10 • written 2.3 years ago by pratibha_jagannatha • 10

Did you ever get an answer to this? I am having the same problem.

ADD REPLY • link written 5 weeks ago by nc52 • 10

Have you looked to see if there are any local firewall restrictions?

ADD REPLY • link written 5 weeks ago by genomax ♦ 70k
2
gravatar for genomax
2.3 years ago by
genomax ♦ 70k
United States
genomax ♦ 70k wrote:

If you are looking for a specific SRA# it may be easier to get the fastq files directly from EBI-ENA. Just search with that accession.
ADD COMMENT • link written 2.3 years ago by genomax ♦ 70k
1
gravatar for ATpoint
5 weeks ago by
ATpoint ♦ 21k
Germany
ATpoint ♦ 21k wrote:

Do yourself a favor and download files directly from the ENA, see Fast download of FASTQ files from the European Nucleotide Archive (ENA)
ADD COMMENT • link written 5 weeks ago by ATpoint ♦ 21k
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