Question: SRA Toolkit fastq-dump error
1
gravatar for pratibha_jagannatha
2.6 years ago by
pratibha_jagannatha10 wrote:

I'm getting this error when using fastq-dump in the SRA toolkit and am not sure what it means or how to fix it...

fastq-dump.2.8.2 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )

rna-seq • 3.0k views
ADD COMMENTlink modified 5 months ago by nc5210 • written 2.6 years ago by pratibha_jagannatha10

Did you ever get an answer to this? I am having the same problem.

ADD REPLYlink written 5 months ago by nc5210

Have you looked to see if there are any local firewall restrictions?

ADD REPLYlink written 5 months ago by genomax75k
2
gravatar for genomax
2.6 years ago by
genomax75k
United States
genomax75k wrote:

If you are looking for a specific SRA# it may be easier to get the fastq files directly from EBI-ENA. Just search with that accession.

ADD COMMENTlink written 2.6 years ago by genomax75k
1
gravatar for ATpoint
5 months ago by
ATpoint26k
Germany
ATpoint26k wrote:

Do yourself a favor and download files directly from the ENA, see Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD COMMENTlink written 5 months ago by ATpoint26k
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