Question: SRA Toolkit fastq-dump error
2
gravatar for pratibha_jagannatha
3.6 years ago by
pratibha_jagannatha20 wrote:

I'm getting this error when using fastq-dump in the SRA toolkit and am not sure what it means or how to fix it...

fastq-dump.2.8.2 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )

rna-seq • 3.6k views
ADD COMMENTlink modified 17 months ago by nc5210 • written 3.6 years ago by pratibha_jagannatha20

Did you ever get an answer to this? I am having the same problem.

ADD REPLYlink written 17 months ago by nc5210

Have you looked to see if there are any local firewall restrictions?

ADD REPLYlink written 17 months ago by GenoMax92k
2
gravatar for GenoMax
3.6 years ago by
GenoMax92k
United States
GenoMax92k wrote:

If you are looking for a specific SRA# it may be easier to get the fastq files directly from EBI-ENA. Just search with that accession.

ADD COMMENTlink written 3.6 years ago by GenoMax92k
1
gravatar for ATpoint
17 months ago by
ATpoint42k
Germany
ATpoint42k wrote:

Do yourself a favor and download files directly from the ENA, see Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD COMMENTlink written 17 months ago by ATpoint42k
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