Closed:miRNA alignment to cDNA data
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7.0 years ago
tshmes ▴ 20

Hello!

I'd like to align mature miRNAs of one species from miRBase database to transcriptome of closely-related species to find target genes for this miRNAs. Are there any tools that help me align RNA to DNA directly? Or do I need convert RNA into DNA and only then align converted sequences to transcriptome?

rna-seq miRNA • 222 views
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