PANTHER vs WebGestalt

Question

[sanathoi]

Hello, which one is more reliable while dealing with Over representation Analysis of NGS/ MicroArray data? I was checking these two database with same query data and i got drastic difference in the results. Any suggestion regarding ORA is most welcome.

Answer 1

[BIOTECH.DEEPTI911]

Hi Sanathoi, I am also dealing with the same NGS data. You can use BinGO, a cytoscape plugin which is very useful as you can visualize the data. WenGestalt is more easy to use.