Question: Creating a contrast matrix for some datasets with no replicates with bunch of normal datasets with replicates
gravatar for U
3.8 years ago by
Boston, MA
U70 wrote:

I have read about 119 CEL files in my rawdata object using ReadAffy.

In this there are CEL files 1:106 comprising of individual patient data that needs to be compared with normal CEL files 107:119. If I want to contrast each CEL files 1:106 with normal CEL files(107:119), how would I create a design and contrast matrix intuitively.

Any help is much appreciated.

limma microarray affy • 968 views
ADD COMMENTlink written 3.8 years ago by U70
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1692 users visited in the last hour