Question: Asking about sample code in TCGAbiolinks
gravatar for landscape95
3.2 years ago by
landscape95170 wrote:

I don't understand why there is no "Gene expression" in the data category on the web but the code still works. (add the library to it)

Code's Source:

GDC project source:

 # You can define a list of samples to query and download providing relative TCGA barcodes.
    listSamples <- c("TCGA-E9-A1NG-11A-52R-A14M-07","TCGA-BH-A1FC-11A-32R-A13Q-07",

    # Query platform Illumina HiSeq with a list of barcode 
    query <- GDCquery(project = "TCGA-BRCA", 
                      data.category = "Gene expression",
                      data.type = "Gene expression quantification",
                      experimental.strategy = "RNA-Seq",
                      platform = "Illumina HiSeq",
                      file.type = "results",
                      barcode = listSamples, 
                      legacy = TRUE)
tcgabiolinks • 1.3k views
ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by landscape95170
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 959 users visited in the last hour