Question: Asking about sample code in TCGAbiolinks
gravatar for landscape95
2.5 years ago by
landscape95160 wrote:

I don't understand why there is no "Gene expression" in the data category on the web but the code still works. (add the library to it)

Code's Source:

GDC project source:

 # You can define a list of samples to query and download providing relative TCGA barcodes.
    listSamples <- c("TCGA-E9-A1NG-11A-52R-A14M-07","TCGA-BH-A1FC-11A-32R-A13Q-07",

    # Query platform Illumina HiSeq with a list of barcode 
    query <- GDCquery(project = "TCGA-BRCA", 
                      data.category = "Gene expression",
                      data.type = "Gene expression quantification",
                      experimental.strategy = "RNA-Seq",
                      platform = "Illumina HiSeq",
                      file.type = "results",
                      barcode = listSamples, 
                      legacy = TRUE)
tcgabiolinks • 1.1k views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by landscape95160
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