Question: Is it possible to plot a radiation tree with ggtree? how?
0
gravatar for Hongru
2.1 years ago by
Hongru0
China
Hongru0 wrote:

Is it possible to plot a radiation tree (example below) with ggtree? If so, how? If not possible, are there any other R packages that can automate radiation tree making?

radiation tree

ADD COMMENTlink modified 2.1 years ago by Joseph Hughes2.7k • written 2.1 years ago by Hongru0
1
gravatar for Joseph Hughes
2.1 years ago by
Joseph Hughes2.7k
Scotland, UK
Joseph Hughes2.7k wrote:

Use the unrooted tree option:

ggtree(tree, layout="unrooted")

The information you are looking for can easily be found with google search: https://bioconductor.org/packages/devel/bioc/vignettes/ggtree/inst/doc/treeVisualization.html#unrooted

ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Joseph Hughes2.7k
0
gravatar for Jake Warner
2.1 years ago by
Jake Warner700
Jake Warner700 wrote:

Non-ggtree answer: You can use APE (analysis of phylogenetics and evolution) to plot an un-rooted tree:

library("ape")
plot(as.phylo(hc), type = "unrooted", cex = 0.6,
 no.margin = TRUE)
ADD COMMENTlink written 2.1 years ago by Jake Warner700
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