How can i find the sequence of human domain ?
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4.2 years ago
arta ▴ 620

Hey,

I have done domain enrichment analysis and I got the significantly enriched domains from pfam. Now I would like to find the sequence of domains in human. Further I will align them for certain groups. But I could not find a source or database. Any help will be much appreciated.

domain database alignment • 891 views
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What is a "sequence of domains"?

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I meant 'protein sequence of domain'.

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Which domain are you referring to?

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There is no specific domain that i am referring. First it should be conserved among other species, (that is why they are called domain), second i have clusters of genes and the domains of the genes should enriched in given cluster. I have the domains for each clusters, now I would like to align them for similarity of sequence or to check signals in the protein sequence. I guess, i was not clear at first. Sorry for that.

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Check out ExPASy.

This sounds like an assignment question. It is still not clear what part of the path you described above you are at.

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