How can I effectively blast lncRNAs against my genome of interest?
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4.2 years ago
a.rex ▴ 280

I wish to look for conservation of lncRNAs between closely related species. I have a candidate list - however, since these lncRNAs are untranslated, blastn is my only option. Does anyone have any experience of what parameters to use for this? Are there any conventional methodologies: i.e. looking for synteny etc?

blast • 768 views
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