Which profile search programs are best? Comparison studies?
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7.0 years ago
kgbenn123 ▴ 20

Is there any point in using HMMer over creating a PSSM of a motif and using PSI-BLAST? I can't find any significant, unbiased (Eddy publishes everything on HMMer performance) comparison studies on HMMer and its becoming difficult to justify using it from a literature review.

HMMer • 1.0k views
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