Closed:Visualization of Amplification and deletion data with genes : CNV

Question

[Vasu]

Hello all,

I'm working with CNV data. I wanted to visualize CNV Gistic thresholded data. It looks like following.

Gene    A95S    A9GS    A9GT    A9GU    A9GV    A9GW   A9GX
ACAP3   1        2         0     -2      1       0     -1
ACTRT   1        2         0     -2      1       0     -1
AGRN    1        2         0     -2      1       0     -1
ANKRD65 1        2         0     -2      1       0     -1

I wanted to generate a plot which looks like this Figure1A (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3198787/figure/F1/)

Previously I had used some R packages for this but it doesn't show any Gene Names, like shown in the above link. Can anyone tell me how to generate such plot. Are there any R packages or any tools?

Thank you