repeat sequence aligner
0
1
Entering edit mode
4.6 years ago
rbpdee ▴ 40

Hi folks,

I am working with an RNA-binding protein and trying to identify the targets of this RNA-binding protein in human cells by iCLIP. I suspect that this protein may bind RNA coming from repeat elements in the human genome. Does anyone know repeat sequence aligner that could handle these elements?

Also, I would like to know if there exists a curated database for repeat elements. Any other suggestion is always welcome!

Thanks!

alignment RNA-Seq CLIP • 912 views
ADD COMMENT

Login before adding your answer.

Traffic: 1802 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6