Could someone please help me download mapping of transcripts to genes that I can use with the Salmon tool on Galaxy? I tried UCSC Genome browser but I'm not sure if I'm doing the right thing.
Here's an example query using biomart. Note that you'd need to swap the columns, but you can do that in Galaxy. If you need different gene/transcript identifiers then you can probably get them from biomart too.
BTW, there's a separate biostar site for Galaxy.
Thanks so much for the input. The example query link is down for some reason, maybe it's temporary.
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