Question: How to determine hybridization states for a protein pdb file format?
gravatar for Karim Afifi
2.3 years ago by
Karim Afifi0 wrote:

How can I determine hybridization state and bond order for all atoms in a protein pdb file? In general, how can I acquire the same information for a pdb file as a mol2 file format? Multiple research papers state that for proteins, bond orders can be easily deduced but for a ligand, it is not easy. I only care about the protein and I want to know the easy approach for it. I don't want any programs that can do the job for me but I want know how do they determine hybridization states, rings and bond orders.

docking protein pdb • 712 views
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