I have managed to generate ChIP-seq data using MACS in GALAXY and can view the resulting .wig and .bed files in IGB no problem. However, I am having trouble figuring out how to add annotations (say from a genbank file) to the reference genome so I can browse the binding sites. I have tried to create a custom reference synonym file using this protocol (https://wiki.transvar.org/display/igbman/View+a+bacterial+genome+in+IGB) but still cannot merge my ChIP-seq data with the resulting annotated reference.
I have also tried importing data that is useable with a built in genome in IGB and the same problem occurs.
Could anyone point me in the direction of how to add genbank annotations to a reference track?
Apologies for the basic question but I am new to both ChIP-seq and IGB and still getting to grips with things. Any help is appreciated.