Tool:An online cute tool to query tumor-gene data from MSK-IMPACT project
1
2
Entering edit mode
4.7 years ago
chen ★ 2.4k

Recently, Memorial Sloan Kettering Cancer Center (MSKCC) published their 10000 tumor patients DNA sequencing data on nature medicine, but the website to use the data is too complicated and not convenient.

I developed an online tool with very simple UI to query MSK-IMPACT data. Just search by gene and mutation, the result will show the samples having this mutation, along with these samples' clinical information.

The tool is at: http://opengene.org/msk

Here is a screenshot:

enter image description here

MSK mutation tumor MSK-IMPACT Tool • 2.0k views
ADD COMMENT
0
Entering edit mode

It would be ideal if you can put up a help or tutorial button. What should be the entry value in the mutation tab?

ADD REPLY
0
Entering edit mode

You should input AAChange, which means amino acid change, like L858R, according to HGVS standard.

ADD REPLY
0
Entering edit mode

Yes I figured it out. It's working. I thought it's still in beta so for newbies if a tutorial or help button is there it will be good.

ADD REPLY
0
Entering edit mode

Yes, it's in beta. Thanks for your suggestion, I put an example on the placeholder, and now it should be easier to understand.

ADD REPLY
0
Entering edit mode

Add an example screenshot (if you can) so people know what output to expect. Looks clean and fast!

ADD REPLY
0
Entering edit mode

Thanks, will do it soon.

ADD REPLY
0
Entering edit mode
4.7 years ago
youcai ▴ 60

skilled driver, awesome job.

ADD COMMENT

Login before adding your answer.

Traffic: 2307 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6