Getting profit (plots, data) from my final GO enrichment analysis..

Question

[Antonio R. Franco]

I've done with a GO enrichment analysis after running a DE analysis, and ended with a file like this

gene02308-v1.0-hybrid   GO:0005773, GO:0006950
gene02380-v1.0-hybrid   GO:2000033, GO:2000280
gene03187-v1.0-hybrid   GO:0005739, GO:0006974, GO:0008270, GO:0009228, GO:0009409, GO:0009570, GO:0009579, GO:0009941, GO:0010319, GO:0016491, GO:0018131, GO:0042803, GO:0055114
gene03388-v1.0-hybrid   GO:0005515, GO:0008270
gene04244-v1.0-hybrid   GO:0004672, GO:0005524, GO:0006468
gene07998-v1.0-hybrid   GO:0005506, GO:0005773, GO:0006631, GO:0010345, GO:0018685, GO:0020037, GO:0055114
gene08674-v1.0-hybrid   GO:0004970, GO:0016020
gene08810-v1.0-hybrid   GO:0003885, GO:0016020, GO:0019853, GO:0050105, GO:0050660, GO:0055114
gene09063-v1.0-hybrid   GO:0005737, GO:0006629, GO:0009626, GO:0016020, GO:0016298, GO:0031408, GO:0046686, GO:0051607, GO:0071456
gene09384-v1.0-hybrid   GO:0005215, GO:0005737, GO:0009505, GO:0009506, GO:0009630, GO:0009734, GO:0009908, GO:0009921, GO:0009925, GO:0009926, GO:0010051, GO:0010229, GO:0010338, GO:0010358, GO:0016021, GO:0045177, GO:0048826, GO:0048830, GO:0055085
gene09410-v1.0-hybrid   GO:0004567, GO:0005975, GO:0009505, GO:0022626, GO:0047668, GO:0080079, GO:0080081, GO:0080082, GO:0080083
gene09663-v1.0-hybrid   GO:0003677
gene11153-v1.0-hybrid   GO:0016021
gene11630-v1.0-hybrid   GO:0004674, GO:0005524, GO:0006468
gene12335-v1.0-hybrid   GO:0008519, GO:0016020, GO:0072488
gene12684-v1.0-hybrid   GO:0005829, GO:0008152, GO:0016758
.....

I want to get nice plots and figures of these data, including clustering, etc Can you kindly recommend any R package or the like for this purpose ?

[Benn]

If you do you enrichment in goseq, you can cluster GO terms (in heatmap) with gogadget. Or cluster them with cytoscape afterwards.