Question: How can I find a minimal bacterial protein dataset ?
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gravatar for ambarishnag
2.0 years ago by
ambarishnag0 wrote:

I want to run blastp/blastx against a minimal bacterial protein database. Is any such database already available ? Alternatively, how can I find sequences to create such a database ? Thanks in advance.

ADD COMMENTlink written 2.0 years ago by ambarishnag0

What do you mean by "minimal"? As in minimal genome? Or as in minimal non-redundant proteins?

ADD REPLYlink written 2.0 years ago by h.mon25k

I'm not quite sure such a database exists if you mean minimal bacterial genome size. Look at this ald article : http://sci-hub.cc/10.1023/B:ORIG.0000009844.90540.52

and newer articles citing it: http://citations.springer.com/item?doi=10.1023/B:ORIG.0000009844.90540.52

ADD REPLYlink written 22 months ago by natasha.sernova3.4k
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