I want to run blastp/blastx against a minimal bacterial protein database. Is any such database already available ? Alternatively, how can I find sequences to create such a database ?
Thanks in advance.
What do you mean by "minimal"? As in minimal genome? Or as in minimal non-redundant proteins?
I'm not quite sure such a database exists if you mean minimal bacterial genome size.
Look at this ald article :
and newer articles citing it:
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