Closed:GSEA - significantly enriched gene sets
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6.9 years ago
Mk ▴ 10

I recently performed GSEA analysis for my studies with 10000 permutations (Msig database for gene sets) but GSEA reported that

0 gene sets are significant at FDR < 25%

Can someone suggest how to extract the list of

Gene sets are significantly enriched at nominal pvalue < 1%

Gene sets are significantly enriched at nominal pvalue < 5%

from the results.

Thanks.

GSEA Gene set enrichment analysis • 112 views
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