.fam files. I have tried shellfish.py program from
using this command
/shellfish/shellfish.py --pca --numpcs 10 --maxprocs 8 --file myfile --out qcvcf --ignore-sge which keeps spitting this error:
16:58:39 256 16:58:39 shellfish error: The command 'which lines' exited with code 256: please ensure that the program 'lines' is present in the current directory (or on your $PATH)
Is there any other ways to do PCA using set of
.fam files? Also, what could be the cause of the error using shellfish.py as I would prefer to use shellfish.py?