Question: tcgabioloink level 1 data
0
gravatar for ugandhar.ch1
2.6 years ago by
ugandhar.ch110
ugandhar.ch110 wrote:

Hi All,

i am using R and Bio conductor to analyze tcga-brca raw microarray data. i am using tcgabioloiks package for do this i am using GDC query, gdc download and GDC prepare to downolad data. i am successfully download data and placed it in working directory. but i am not getting expression set after gdc prepare command. i am not sure what step should i follow after gdc prepare for further analysis? my final aim is to get differential gene expression values. please help me

Thank you

regards ugandhar

snp R software error • 700 views
ADD COMMENTlink modified 2.6 years ago by Mike1.4k • written 2.6 years ago by ugandhar.ch110
0
gravatar for Mike
2.6 years ago by
Mike1.4k
UK
Mike1.4k wrote:

Could you please post your initial code, so it would be easy for others to find out your error.

ADD COMMENTlink written 2.6 years ago by Mike1.4k
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