Question: tcgabioloink level 1 data
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gravatar for ugandhar.ch1
3 months ago by
ugandhar.ch110
ugandhar.ch110 wrote:

Hi All,

i am using R and Bio conductor to analyze tcga-brca raw microarray data. i am using tcgabioloiks package for do this i am using GDC query, gdc download and GDC prepare to downolad data. i am successfully download data and placed it in working directory. but i am not getting expression set after gdc prepare command. i am not sure what step should i follow after gdc prepare for further analysis? my final aim is to get differential gene expression values. please help me

Thank you

regards ugandhar

snp R software error • 163 views
ADD COMMENTlink modified 3 months ago by Mike670 • written 3 months ago by ugandhar.ch110
0
gravatar for Mike
3 months ago by
Mike670
UK
Mike670 wrote:

Could you please post your initial code, so it would be easy for others to find out your error.

ADD COMMENTlink written 3 months ago by Mike670
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