Question: (Closed) Getting sequences from a fasta file.
0
gravatar for felipe-bita
2.2 years ago by
felipe-bita0 wrote:

Hi guys,

I am facing a problem, basically i have a fasta file, CDS of O. sativa, and i have a list of genes that i want to take from the CDS and write them in another fasta file, this list consists of 16k genes so i cant do it manually. I am using linux and i have a little experience in bioperl, if anyone can help me i would be very thankful.

cds linux perl fasta • 518 views
ADD COMMENTlink written 2.2 years ago by felipe-bita0
1

Hello felipe-bita!

This type of query has been answered many times before. Extract Sequence From Fasta File Using Ids From A Separate File

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by genomax70k

Did you trying anything? This type of question has been asked and answered, many times. Why do you want to use bioperl?

ADD REPLYlink written 2.2 years ago by st.ph.n2.5k
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