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6.9 years ago
1769mkc
★
1.2k
I m using this featurecount command to extract read count from my bam files , is it the correct one im using or there is some issue with my command .
featureCounts -T 40 -p -A -s -f -O -t exon -g gene_id -a /home/punit/ERCCgencode.v21.annotation.gtf -o /home/punit/FCOUNT/newhl60.txt ~/bamfiles/WT1.bam ~/bamfiles/WT2.bam ~/bamfiles/AT1.bam ~/bamfiles/AT2.bam ~/bamfiles/VD1.bam ~/bamfiles/VD2.bam
yes Im using the output for deseq2