Question: Best splicing variant
0
gravatar for valopes
13 months ago by
valopes10
valopes10 wrote:

Dear friends,

I need to get the best splicing variant of all soybean transcripts. How can I do that? Can I say that the longest is the "best splicing variant"?

Thanks

rna-seq • 341 views
ADD COMMENTlink modified 13 months ago by jnoble33320 • written 13 months ago by valopes10

Can I say that the longest is the "best splicing variant"?

No, why would that be the best one?
Another method would be to select the most abundantly expressed...

ADD REPLYlink written 13 months ago by WouterDeCoster29k

Sure. This makes more sense. Thank you.

ADD REPLYlink written 13 months ago by valopes10
0
gravatar for jnoble333
13 months ago by
jnoble33320
jnoble33320 wrote:

What do you mean by best? Would it be the most highly expressed variant? It really comes down to what question you are trying to answer with your data set.

ADD COMMENTlink written 13 months ago by jnoble33320

Yep, I don't even think the question makes any sense. "best splicing variant"? That has no meaning.

ADD REPLYlink written 13 months ago by Brian Bushnell15k
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