Question: Best splicing variant
0
gravatar for valopes
4 weeks ago by
valopes0
valopes0 wrote:

Dear friends,

I need to get the best splicing variant of all soybean transcripts. How can I do that? Can I say that the longest is the "best splicing variant"?

Thanks

rna-seq • 103 views
ADD COMMENTlink modified 4 weeks ago by jnoble33310 • written 4 weeks ago by valopes0

Can I say that the longest is the "best splicing variant"?

No, why would that be the best one?
Another method would be to select the most abundantly expressed...

ADD REPLYlink written 4 weeks ago by WouterDeCoster18k

Sure. This makes more sense. Thank you.

ADD REPLYlink written 4 weeks ago by valopes0
0
gravatar for jnoble333
4 weeks ago by
jnoble33310
jnoble33310 wrote:

What do you mean by best? Would it be the most highly expressed variant? It really comes down to what question you are trying to answer with your data set.

ADD COMMENTlink written 4 weeks ago by jnoble33310

Yep, I don't even think the question makes any sense. "best splicing variant"? That has no meaning.

ADD REPLYlink written 4 weeks ago by Brian Bushnell11k
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