I am looking for a database where I can find germline, genome-wide/noncoding sequencing data in cancer patients.
There are plenty of exome-sequencing studies and somatic variant calls available but I'm having real trouble finding something with my exact specifictions of germline & genome-wide/noncoding (& preferably breast cancer).
The TCGA database seems to me to have germline data from breast cancer patients, but I think it is only whole-exome-sequencing. So far I have found one study through the ICGC, it's controlled data from WGS in French patients. link here
Has anyone spotted a similar study/database?
At this stage I'd be willing to have a look at somatic variants without the germline filtered out, if that's possible, and failing that I'd be willing to branch out to ovarian cancer... Thanks!