Question: Binary to DNA sequence
0
gravatar for khn
2.1 years ago by
khn110
khn110 wrote:

Hello,

Can anybody please teach me how to convert binary to ATCG?

I have two sets of bed/bim/fam files.

  1. The first files. The sequences are shown as binary.
  2. The second files. These are after imputation of the first files. The sequences are shown as ATCG. Some SNPs in the first files are missing in the second files.

I want to convert binary to ATCG in the first files, using the results of the second files.

Thank you in advance!

snp plink sequence genome • 1.4k views
ADD COMMENTlink modified 5 months ago by zx87547.7k • written 2.1 years ago by khn110
1

See here and here.

ADD REPLYlink written 2.1 years ago by h.mon26k

Thank you so much. I have created the vcf files from the second files, but can you please tell me what would be the next step?

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by khn110
0
gravatar for vishwaas1704
5 months ago by
vishwaas170430
vishwaas170430 wrote:

The script to do it is available at

https://github.com/abhijeetsingh1704/BINARY_to_DNA/blob/master/BINARY_2_DNA.sh

ADD COMMENTlink written 5 months ago by vishwaas170430
1

I don't think this is relevant.

ADD REPLYlink written 5 months ago by zx87547.7k
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