Binary to DNA sequence

Question

[khn]

Hello,

Can anybody please teach me how to convert binary to ATCG?

I have two sets of bed/bim/fam files.

1. The first files. The sequences are shown as binary.
2. The second files. These are after imputation of the first files. The sequences are shown as ATCG. Some SNPs in the first files are missing in the second files.

I want to convert binary to ATCG in the first files, using the results of the second files.

Thank you in advance!

[h.mon]

See here and here.

[khn]

Thank you so much. I have created the vcf files from the second files, but can you please tell me what would be the next step?

Answer 1

[vishwaas1704]

The script to do it is available at

https://github.com/abhijeetsingh1704/BINARY_to_DNA/blob/master/BINARY_2_DNA.sh

[zx8754]

I don't think this is relevant.