Question: Big Data Translation
0
gravatar for l.souza
2.2 years ago by
l.souza70
Brasilia, Brazil
l.souza70 wrote:

What tool can I use to translate a big amount of sequences of DNA into Amino Acids?

ADD COMMENTlink modified 2.2 years ago by genomax70k • written 2.2 years ago by l.souza70
1

Do you need to simply translate DNA into amino acids, or do you need to predict coding regions in transcripts? TransDecoder does the second task.

ADD REPLYlink written 2.2 years ago by h.mon26k

Simply translate DNA into amino acids.

ADD REPLYlink written 2.2 years ago by l.souza70
3
gravatar for genomax
2.2 years ago by
genomax70k
United States
genomax70k wrote:

EMBOSS TransSeq or SixPack.

For a lot of data you would want to download EMBOSS for running it locally.

ADD COMMENTlink written 2.2 years ago by genomax70k

Don't you know any local software that runs in Windows?

ADD REPLYlink written 2.2 years ago by l.souza70
1

EMBOSS for windows, here:

ftp://emboss.open-bio.org/pub/EMBOSS/windows/mEMBOSS-6.5.0.0-setup.exe

ADD REPLYlink written 2.2 years ago by h.mon26k

that runs in Windows?

If that is an important requirement for you then you should mention that in your question.

In addition, if the answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted. Upvote|Bookmark|Accept

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by WouterDeCoster40k
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