Question: mapping identifiers uniprot annotations of proteins
0
gravatar for amroumouna
3.0 years ago by
amroumouna0
amroumouna0 wrote:

Having a file of for about 10k mapping identifiers how can I get the annotations of the proteins from Uniprot ? As it is not possible to do It manually

ADD COMMENTlink modified 3.0 years ago by Elisabeth Gasteiger1.7k • written 3.0 years ago by amroumouna0
2
gravatar for Elisabeth Gasteiger
3.0 years ago by
Geneva
Elisabeth Gasteiger1.7k wrote:

You can upload your list of UniProtKB accession numbers to the batch retrieval service for the UniProt Konwledgebase, http://www.uniprot.org/uploadlists

A video tutorial for this service is available at

Once you have retrieved your proteins, you can click on "Columns" to customize your output and add columns, e.g. for function annotation. See also http://www.uniprot.org/help/customize or http://insideuniprot.blogspot.ch/2015_03_01_archive.html Results can then be downloaded in tab-separated format.

If you have any additional questions, please don't hesitate to contact the UniProt helpdesk.

ADD COMMENTlink written 3.0 years ago by Elisabeth Gasteiger1.7k
2
gravatar for Jean-Karim Heriche
3.0 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche22k wrote:

Use Uniprot's REST API

ADD COMMENTlink written 3.0 years ago by Jean-Karim Heriche22k
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