Finding HTSeq count data for NIH datasets.
1
0
Entering edit mode
4.5 years ago

Hi, I'm new here (and in general). I hope it's not a terrible question, but I've been frustrated with trying to see if I can get the gene counts for a paper that was published on several transcriptomes: https://www.nature.com/articles/sdata201630

The best I've been able to find is this set of SRA material, but it only seems to have the original raw reads. https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP059260

I can download/wget the files and rerun them through a pipeline, but the work's already been done, and I don't want to endure that pain if they are readily available somewhere.

Can someone please help me navigate the NCBI links and tell me if such a thing exists already?

Thank you so much!

rna-seq nih • 979 views
ADD COMMENT
0
Entering edit mode
4.5 years ago
colindaven ★ 3.3k

This resource might meet your needs. An australian resource (Brisbane?) also exists, but I forget it's name.

https://jhubiostatistics.shinyapps.io/recount/

ADD COMMENT

Login before adding your answer.

Traffic: 2487 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6