Question: Is the DGRP data phased?
0
gravatar for mufernando
3.2 years ago by
mufernando10
Brazil
mufernando10 wrote:

My question is described in the title.

I thought it was phased, but according to VCFtools it isn't:

vcftools  --vcf dgrp2.vcf --phased --out teste

VCFtools - UNKNOWN
(C) Adam Auton and Anthony Marcketta 2009

Parameters as interpreted:
    --vcf immune.vcf
    --out teste
    --phased

After filtering, kept 205 out of 205 Individuals
After filtering, kept 0 out of a possible 39929 Sites
No data left for analysis!
Run Time = 1.00 seconds

Am I doing something wrong or is DGRP unphased?

Thanks!

dgrp vcftools next-gen vcf • 944 views
ADD COMMENTlink modified 3.0 years ago by Biostar ♦♦ 20 • written 3.2 years ago by mufernando10

nobody has a clue of what's going on here?

ADD REPLYlink written 3.2 years ago by mufernando10
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