Question: tools or package for meta-analysis of chip-seq result
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gravatar for Brice222
14 months ago by
Brice22230
Brice22230 wrote:

Hi

mean that i did chip-seq analysis data with command line on ubuntu

I used the MACS2 peak caller for obtain the peakset files .

now i want to finde a package that integrate my peakset data (obtained from macs2 ) in multiple study .

which tools or package that i used is good ???

I hope that it is simly

Thanks

chip-seq next-gen R • 452 views
ADD COMMENTlink written 14 months ago by Brice22230

Integrate the peaks to what end? "Integrate" is a very vague term that can mean any number of concrete things.

ADD REPLYlink written 14 months ago by Devon Ryan82k

i want to (meta-analysis) find Important peak in samples.

ADD REPLYlink written 14 months ago by Brice22230

And how would you like to define important?

ADD REPLYlink written 14 months ago by Devon Ryan82k

Do you want to obtain common peaks?

ADD REPLYlink written 14 months ago by Ben50

i want to (meta-analysis) find Important peak in samples.

ADD REPLYlink written 14 months ago by Brice22230
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