tools or package for meta-analysis of chip-seq result
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5.2 years ago
Brice222 ▴ 30

Hi

mean that i did chip-seq analysis data with command line on ubuntu

I used the MACS2 peak caller for obtain the peakset files .

now i want to finde a package that integrate my peakset data (obtained from macs2 ) in multiple study .

which tools or package that i used is good ???

I hope that it is simly

Thanks

ChIP-Seq next-gen R • 1.3k views
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Integrate the peaks to what end? "Integrate" is a very vague term that can mean any number of concrete things.

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i want to (meta-analysis) find Important peak in samples.

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And how would you like to define important?

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Do you want to obtain common peaks?

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i want to (meta-analysis) find Important peak in samples.

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