Question: Using RNA seq for genome annotation
0
gravatar for Picasa
23 months ago by
Picasa390
Picasa390 wrote:

Hi,

I would like to provide rna seq evidence to Maker for genome annotation.

For the transcriptome building, I have done a reference based assembly with STAR+cufflinks but I am not sure if it is the correct way,

Do you have some experience with this ?

maker annotation • 988 views
ADD COMMENTlink modified 23 months ago by Ben50 • written 23 months ago by Picasa390

Do you want to annotate the genome?

ADD REPLYlink written 23 months ago by Ben50

yes, and i want to provide rna seq evidence

ADD REPLYlink written 23 months ago by Picasa390

RNA-seq evidenece? I do not understand what you want to express

ADD REPLYlink written 23 months ago by Ben50

Well Maker needs (not mandatory but recommended) transcriptome to infer gene with gene predictor.

ADD REPLYlink written 22 months ago by Picasa390
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