Question: Extract CDS from an extracted gene without bioperl
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gravatar for adeena_hassan
3.1 years ago by
adeena_hassan50 wrote:

HI everyone

I have extracted genes from whole genome using bedtools getfasta command and now i want to get CDS of each gene by using any tool, because every script (which are given in different biostar posts) i tried have some bugs and as I'm beginner in bioinformatics i can't handle or edit those scripts properly,, I have fna and gff files of 100 genomes and i have extracted 2 genes from each and now i want to extract CDS kindly help me how to do so i have short time for this task.. :(

Edit: i have find emboss tool but it requires genbank files as input and i don't know how to extract single gene from genbank whole genome file without bioperl or python

tool cds • 794 views
ADD COMMENTlink modified 3.1 years ago by Ben50 • written 3.1 years ago by adeena_hassan50
0
gravatar for Ben
3.1 years ago by
Ben50
Ben50 wrote:

Now you have obtained the CDS of genes, then you just convert cDNA to RNA,

ADD COMMENTlink written 3.1 years ago by Ben50
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