Extract CDS from an extracted gene without bioperl
1
0
Entering edit mode
5.2 years ago

HI everyone

I have extracted genes from whole genome using bedtools getfasta command and now i want to get CDS of each gene by using any tool, because every script (which are given in different biostar posts) i tried have some bugs and as I'm beginner in bioinformatics i can't handle or edit those scripts properly,, I have fna and gff files of 100 genomes and i have extracted 2 genes from each and now i want to extract CDS kindly help me how to do so i have short time for this task.. :(

Edit: i have find emboss tool but it requires genbank files as input and i don't know how to extract single gene from genbank whole genome file without bioperl or python

CDS Tool • 1.1k views
ADD COMMENT
0
Entering edit mode
5.2 years ago
Ben ▴ 50

Now you have obtained the CDS of genes, then you just convert cDNA to RNA,

ADD COMMENT

Login before adding your answer.

Traffic: 1365 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6