Question: rna seq docker
1
gravatar for novicebioinforesearcher
2.5 years ago by

I came across today wiht docker and how useful it is, the eprson at presentation spoke only about specific hello world example. I was wondering if there is some tutorial that teaches how to buil and use a docker image for rna seq analysis for example image with fastqc,trimmomatic,hisat2, stringtie etc..

Thanks.

docker • 1.1k views
ADD COMMENTlink modified 2.2 years ago by ypriverol0 • written 2.5 years ago by novicebioinforesearcher50
1

See this example.

This thread is a bit older: Docker - one image to rule them all?

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by genomax75k

Thank you will go over it.

ADD REPLYlink written 2.5 years ago by novicebioinforesearcher50
0
gravatar for Devon Ryan
2.5 years ago by
Devon Ryan93k
Freiburg, Germany
Devon Ryan93k wrote:

For most common tools there are already docker images, since every tool in bioconda has a docker image made for it automatically.

ADD COMMENTlink written 2.5 years ago by Devon Ryan93k
0
gravatar for ypriverol
2.2 years ago by
ypriverol0
ypriverol0 wrote:

You can search for containers in bioinformatics in www.biocontainers.pro/registry or request for them in github.com/BioContainers

ADD COMMENTlink written 2.2 years ago by ypriverol0
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