Question: use proovread to correct Pacbio reads with Illumina reads
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gravatar for shuchen
4 months ago by
shuchen10
shuchen10 wrote:

I am trying to use proovread to correct Pacbio reads with Illumina reads. However, this process costs a very long running time. Is there any way to accelerate this process? I am thinking to normalize the read depth to 30X. Will this significanlt shoreten the running time? Hope there is someone had experience with proovread and your suggestion is very much appreciated.

ADD COMMENTlink modified 4 months ago • written 4 months ago by shuchen10
0
gravatar for shuchen
4 months ago by
shuchen10
shuchen10 wrote:

Also,when I designated multiple illumina fastq files, it seems that proovread only use the first fastq file for the correction. Do I need to merge all the fastq files before running proovread? Or I am not using proovread right?

ADD COMMENTlink written 4 months ago by shuchen10
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