Question: (Closed) WGCNA requires always a trait data?
0
gravatar for adriana.gallego.02
3.0 years ago by
adriana.gallego.0210 wrote:

Hi, I did an RNA-seq analysis and Im planning to analyze with WGCNA, I have seen several papers with trait data, but I have a large RNA-seq sampling but few trait data. I was wondering if it is valid just do WGCNA with the expression data.

Thanks

rna-seq wgcna • 1.4k views
ADD COMMENTlink modified 3 months ago by Biostar ♦♦ 20 • written 3.0 years ago by adriana.gallego.0210

Hello adriana.gallego.02!

It appears that your post has been cross-posted to another site: https://support.bioconductor.org/p/96569/

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 3.0 years ago by WouterDeCoster43k

This is amusing, since WGCNA isn't a bioconductor package, so it'll get 0 support on that site :P

ADD REPLYlink written 3.0 years ago by Devon Ryan95k
3

Although, if I'm not mistaken, the author is active there.

ADD REPLYlink written 3.0 years ago by WouterDeCoster43k

Hello adriana.gallego.02!

We believe that this post does not fit the main topic of this site.

OP did never follow up.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3 months ago by ATpoint35k
1
gravatar for Devon Ryan
3.0 years ago by
Devon Ryan95k
Freiburg, Germany
Devon Ryan95k wrote:

To what end? The point of WGCNA is to use a network approach to find large groups associated with phenotypic changes.

ADD COMMENTlink written 3.0 years ago by Devon Ryan95k
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