Question: problem in the istallation of CNVnator
0
gravatar for misbahbiostar
2.5 years ago by
misbahbiostar0 wrote:

hello,

i am beginner in this field, I am trying to install CNVnator but there is error when "make" in the cnvnator/src . please tell me because I can not understand it thanks

Compiling with parallel (OpenMP) support g++ -O3 -std=c++11 -DCNVNATOR_VERSION=\"v0.3.3\" -fopenmp -o cnvnator obj/cnvnator.o obj/EXOnator.o obj/HisMaker.o obj/AliParser.o obj/Genotyper.o obj/Interval.o obj/Genome.o samtools/libbam.a samtools/htslib-1.3.1/libhts.a -lz -L/lib -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore /usr/bin/ld: cannot find -lCore /usr/bin/ld: cannot find -lRIO /usr/bin/ld: cannot find -lHist /usr/bin/ld: cannot find -lGraf /usr/bin/ld: cannot find -lGpad /usr/bin/ld: cannot find -lTree /usr/bin/ld: cannot find -lMathCore collect2: error: ld returned 1 exit status make: * [cnvnator] Error 1

genome • 803 views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by misbahbiostar0

Did you install ROOT?

ADD REPLYlink written 2.5 years ago by h.mon29k
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