Question: CWL: SLurm Job Sheduler
gravatar for kevin.o.oluoch
3.5 years ago by
kevin.o.oluoch70 wrote:

Does the slurm job scheduler work with Common Workflow Language implementations? How can I use it to run multiple files?

cwl slurm • 2.1k views
ADD COMMENTlink modified 18 months ago by Biostar ♦♦ 20 • written 3.5 years ago by kevin.o.oluoch70
gravatar for Michael R. Crusoe
3.5 years ago by
Common Workflow Language project
Michael R. Crusoe1.8k wrote:

Hello kevin.o.oluoch & thank you for your question,

At we see both Arvados and Toil listing support for the Slurm Workload Manager. Arvados requires Docker, which you might not have available.

Toil's documentation for running CWL workflows is at

To run using Slurm, try cwltoil --batchSystem slurm --disableCaching my_workflow.cwl my_inputs.yaml

You may need to set additional Slurm options via the TOIL_SLURM_ARGS environment variable, see the first part of

I hope this was helpful.


ADD COMMENTlink written 3.5 years ago by Michael R. Crusoe1.8k
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