Question: Collect quality information from raw sequencing data
gravatar for sai
11 weeks ago by
sai0 wrote:


I have multiple illumina WGS data and I would like to collect quality information from all samples. I know fastQC report tells the quality information by producing graphs, but I want to summarise the quality scores in number like "% Bases Q ≥ 30 = 80" since I have multiple samples.

I searched for programs which can do this, but I couldn't find. Does anyone have any idea on this? or better idea to summarise quality information of raw sequencing data?

fastq quality check wgs • 141 views
ADD COMMENTlink modified 11 weeks ago by shenwei3563.2k • written 11 weeks ago by sai0
gravatar for shenwei356
11 weeks ago by
shenwei3563.2k wrote:

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report

ADD COMMENTlink written 11 weeks ago by shenwei3563.2k

Thank you for your suggestion! I will definitely try that.

ADD REPLYlink written 11 weeks ago by sai0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1465 users visited in the last hour