Question: Collect quality information from raw sequencing data
gravatar for sai
6 months ago by
sai0 wrote:


I have multiple illumina WGS data and I would like to collect quality information from all samples. I know fastQC report tells the quality information by producing graphs, but I want to summarise the quality scores in number like "% Bases Q ≥ 30 = 80" since I have multiple samples.

I searched for programs which can do this, but I couldn't find. Does anyone have any idea on this? or better idea to summarise quality information of raw sequencing data?

fastq quality check wgs • 235 views
ADD COMMENTlink modified 6 months ago by shenwei3563.4k • written 6 months ago by sai0
gravatar for shenwei356
6 months ago by
shenwei3563.4k wrote:

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report

ADD COMMENTlink written 6 months ago by shenwei3563.4k

Thank you for your suggestion! I will definitely try that.

ADD REPLYlink written 6 months ago by sai0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 645 users visited in the last hour