Question: Collect quality information from raw sequencing data
0
gravatar for sai
11 weeks ago by
sai0
sai0 wrote:

Hi,

I have multiple illumina WGS data and I would like to collect quality information from all samples. I know fastQC report tells the quality information by producing graphs, but I want to summarise the quality scores in number like "% Bases Q ≥ 30 = 80" since I have multiple samples.

I searched for programs which can do this, but I couldn't find. Does anyone have any idea on this? or better idea to summarise quality information of raw sequencing data?

fastq quality check wgs • 141 views
ADD COMMENTlink modified 11 weeks ago by shenwei3563.2k • written 11 weeks ago by sai0
1
gravatar for shenwei356
11 weeks ago by
shenwei3563.2k
China
shenwei3563.2k wrote:

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report

ADD COMMENTlink written 11 weeks ago by shenwei3563.2k

Thank you for your suggestion! I will definitely try that.

ADD REPLYlink written 11 weeks ago by sai0
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