Question: CAI and strandbias online tool
0
gravatar for flavia
20 months ago by
flavia0
flavia0 wrote:

Dear fellows, I am following a paper entitled “Comparative Genomics Analysis of Mycobacterium ulcerans for the Identification of Putative Essential Genes and Therapeutic Candidates” I have tried several time to contact with the author but I don't get any reply then I post here. I firstly retrieve the non-host protein and then the essential genes by using blastp but now I have to find out the strand bias of this using ori-finder but Q1: (it accepts only nucleotide sequence while I hv the AA seq.) secondly while trying to find out CAI(codon adaptation index) tools mostly wht i come across accept nucleotide sequence and the third question is I have to identify non-host essential protein for which I have to take common from non-host protein & essential genes now the main concerned is they take common on the basis of uniprot ids while in my case non-host ids are in this format (ABO10519.1,ABO10921.1) and esential genes ids are I this format(WP_000005669.1 WP_000007331.1) how should I take common and how they have uniprot ids in both there files.

cai strandbias • 447 views
ADD COMMENTlink modified 20 months ago • written 20 months ago by flavia0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1359 users visited in the last hour