I'm looking for a software which can generate a matrix of nobs x nSNP (0 : no snp / 1 : heterozygote / 2 : homozygote or 0 : absence / 1 : presence).
I found the software PLINK with the command
plink --simulate (http://zzz.bwh.harvard.edu/plink/simulate.shtml) but I didn't find the way to extract the simulated data from this function.
Do you know the way to do that or an other software ? If not, is there publication about the probability laws that I could use to simulate my data ?
Thanks for you help,