Question: How to retrieve non homologous protein sequences after blasting - Blastp
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gravatar for nombaliphumelele
2.7 years ago by
nombaliphumelele0 wrote:

Hey guys. I was using Blastp to blast the protein sequences of mycobacterial tuberculosis F11 against the human sapien protein sequences. Now i have to retrieve a file that has all the proteins sequences that are not homologous in between these two species. So can you please tell me how can retrieve that file under NCBI-Blastp

blast • 950 views
ADD COMMENTlink written 2.7 years ago by nombaliphumelele0

You'll want to find sequences that did not significantly hit the database. The less similar they are, you can assume that they are non-homologous sequences. This post may help.

ADD REPLYlink written 2.7 years ago by st.ph.n2.5k

a file that has all the proteins sequences that are not homologous in between these two species.

Is that proteins that had no hits in human?

So can you please tell me how can retrieve that file under NCBI-Blastp

What do you mean by that? Retrieve above protein entries from your input into a new file?

ADD REPLYlink written 2.7 years ago by genomax78k
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