Question: variants collapsing for GWAS
0
gravatar for reds.nik
23 months ago by
reds.nik40
reds.nik40 wrote:

Good afternoon to everybody, I am working on whole genome seq data and I am trying to figure out which is a good window size to collapse variants accross the gnome in order to run a GWAS. I see from literature that there is no consensus. Someone collapses by a fixed SNP number and someone else by fixed windows size. At this stage i don't want to collpase variants by functional regions beacuse I need to cover the whole genome, so I was wondering if anyone could suggest me which could be a good window size or If you know any good paper about that. thanks

genome • 536 views
ADD COMMENTlink written 23 months ago by reds.nik40
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1826 users visited in the last hour