Question: How to run Maple-2.3.0 (genome.jp) on the command-line?
0
gravatar for jolespin
22 months ago by
jolespin120
United States
jolespin120 wrote:

I would like to use: http://www.genome.jp/tools/maple/

I have 33 draft genomes and I want to calculate the module completeness ratios for all of the draft genomes. I've been doing them individually through the browser but it's taking a long time. It also crashed when I ran too many at the same time. Is there anyway to to download this onto my local machine/server to run the analysis? My data is in the form of protein fasta files.

ADD COMMENTlink written 22 months ago by jolespin120

It seems Maple is not available for download. Better contact the authors to be sure.

ADD REPLYlink written 22 months ago by h.mon24k

"We are sorry, but the stand-alone version of MAPLE is not provided." :( Copy and paste life . I might try to make an apple script tool. Do you know of anything else that can achieve this type of module completion ratio? I have been using genome properties but the kegg ids are so nice to work with.

ADD REPLYlink written 22 months ago by jolespin120

In addition to osascript, you could also use xdotool to perform automation.

ADD REPLYlink written 20 months ago by SMK50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1775 users visited in the last hour