Question: How to run Maple-2.3.0 (genome.jp) on the command-line?
0
gravatar for jolespin
3.4 years ago by
jolespin130
United States
jolespin130 wrote:

I would like to use: http://www.genome.jp/tools/maple/

I have 33 draft genomes and I want to calculate the module completeness ratios for all of the draft genomes. I've been doing them individually through the browser but it's taking a long time. It also crashed when I ran too many at the same time. Is there anyway to to download this onto my local machine/server to run the analysis? My data is in the form of protein fasta files.

ADD COMMENTlink written 3.4 years ago by jolespin130

It seems Maple is not available for download. Better contact the authors to be sure.

ADD REPLYlink written 3.4 years ago by h.mon31k

"We are sorry, but the stand-alone version of MAPLE is not provided." :( Copy and paste life . I might try to make an apple script tool. Do you know of anything else that can achieve this type of module completion ratio? I have been using genome properties but the kegg ids are so nice to work with.

ADD REPLYlink written 3.4 years ago by jolespin130

In addition to osascript, you could also use xdotool to perform automation.

ADD REPLYlink written 3.2 years ago by AK1.9k
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