Hello all,
I've done chip-seq analysis with macs2 & got bed & bedgraph files for peaks. My organism is mycobacterium tuberculosis & I cannot find the organism on UCSC browser. How to visualise the files now? Please help me out.
Thank you in advance :)
anupriyaverma1408 : You should check out UCSC MIcrobial genome browser. Here is one for Mycobacterium and then use a custom track or @Pierre's suggestion.
Thanks Pierre & Genomax.
Custom tracks creation was not needed right now as the required organism was already present on http://microbes.ucsc.edu. So I simply uploaded the bedgraph files from macs2 as discussed here: Visualising BedGraph files on UCSC [custom tracks]
Thanks for this blog, seems useful for my next organism: http://plindenbaum.blogspot.in/2013/07/playing-with-ucsc-genome-browser-track.html